Get ready to fall in love with Deep Dish Pizza Cupcakes — a bite-sized twist on your favorite pizzeria classic, baked right in a muffin tin! These adorable mini pizzas are packed with gooey cheese, zesty sauce, and crispy edges, making them perfect for parties, lunchboxes, or satisfying a sudden pizza craving. You’ll get all the delicious layers of a traditional deep dish, but in a hand-held form that’s fun for both kids and adults. Gather some simple ingredients and whip up a dozen in less than half an hour; it’s comfort food meets convenience at its very best!

Ingredients You’ll Need
Everything you need for Deep Dish Pizza Cupcakes is probably already in your pantry or fridge! Each ingredient plays a special part — from the doughy base all the way to the flavorful toppings — and you can mix and match according to your favorite pizza flavors.
- Refrigerated pizza dough (1 13.8 oz can): The foundation for each cupcake, giving you that irresistible chewy, pillowy bite in minutes.
- Pizza sauce (1/2 cup): Adds a bright, tangy flavor that soaks right into the dough for that classic pizza taste.
- Shredded mozzarella cheese (1 cup): Melts wonderfully, creating stretchy, gooey layers in every bite.
- Grated Parmesan cheese (1/4 cup): Sprinkling this on top brings a salty, nutty finish that deepens the flavor.
- Mini pepperoni slices or chopped pepperoni (1/2 cup): The classic pizza topping, adding savory depth and a bit of crispiness if it peeks above the cheese.
- Italian seasoning (1/4 teaspoon): A sprinkle gives the cupcakes an herby, aromatic boost.
- Nonstick cooking spray: Ensures your pizza cupcakes pop right out of the muffin tin without sticking or tearing.
- Optional toppings (bell peppers, mushrooms, olives): Make your Deep Dish Pizza Cupcakes your own by tossing in colorful veggies for extra flavor and crunch.
How to Make Deep Dish Pizza Cupcakes
Step 1: Prep the Pan and Dough
Start by preheating your oven to 375°F and grabbing a standard 12-cup muffin tin. Spray each cup generously with nonstick cooking spray — you don’t want any cheesy bits sticking around! Unroll your can of pizza dough on a clean surface and slice it into 12 equal squares. Press a square into each muffin well, stretching gently so the dough covers the bottom and comes up the sides, creating a little pizza “nest” for all your toppings.
Step 2: Spoon in the Sauce
Dollop about 2 teaspoons of pizza sauce into the bottom of each dough-lined cup. Don’t overload it: a little goes a long way in keeping the base crisp but still saucy and flavorful. Spread the sauce gently with the back of a spoon to cover the bottom.
Step 3: Layer the Cheese and Pepperoni
Sprinkle a generous pinch of shredded mozzarella into each cup, over the sauce, and then scatter on your chopped pepperoni or mini slices. If you’d rather keep it vegetarian, now’s the time to add diced bell peppers, mushrooms, or olives for a custom twist. Cheese forms the protective gooey layer, while the toppings bring bursts of hearty flavor.
Step 4: Add Parmesan and Seasonings
Finish your Deep Dish Pizza Cupcakes off by dusting the tops with grated Parmesan cheese, which will melt to a golden crown. Add a little pinch of Italian seasoning to each cupcake for that classic pizzeria aroma — your kitchen will start smelling incredible by now!
Step 5: Bake and Cool
Pop the muffin tin in the oven and bake for 15 to 18 minutes until the dough is puffed and golden and the cheese is bubbly and starting to brown on top. Let the cupcakes cool in the tin for 5 minutes — this helps them set up, so you can lift them out easily without losing any gooey goodness. Serve them warm for the ultimate treat!
How to Serve Deep Dish Pizza Cupcakes

Garnishes
Take your Deep Dish Pizza Cupcakes to the next level with a few easy garnishes! Add a sprinkle of fresh basil or chopped parsley for color and a fresh pop. For a little spice, a touch of crushed red pepper flakes works wonders. You can also drizzle a little olive oil or even add extra Parmesan right before serving.
Side Dishes
Pair these mini pizza wonders with a crisp green salad tossed in a tangy vinaigrette, or go for classic sides like garlic knots or roasted vegetables. If you’re hosting a party, lay them out with a platter of fresh-cut veggies and ranch dip, so everyone can build their own fun meal around these savory bites.
Creative Ways to Present
Arrange your Deep Dish Pizza Cupcakes on a wooden board for a rustic, party-ready presentation. For a kid-friendly lunch, pop a few into a bento-style box with fruit and carrot sticks. If you’re serving a crowd, sprinkle a platter with extra herbs and set out little bowls of dipping sauces (think ranch, marinara, or pesto) for interactive, flavor-boosting fun.
Make Ahead and Storage
Storing Leftovers
If you have leftover Deep Dish Pizza Cupcakes (which is rare!), let them cool completely before popping them into an airtight container. They’ll keep in the fridge for up to 3 days — perfect for quick snacks or lunchbox treats.
Freezing
To freeze, wrap each cooled cupcake individually in plastic wrap and then place them in a zip-top freezer bag. They’ll stay fresh for up to 2 months. Just be sure to thaw in the fridge overnight for best texture when you’re ready to enjoy them again.
Reheating
For the best melty cheese and crispy edges, reheat Deep Dish Pizza Cupcakes in a 350°F oven for about 8-10 minutes, or until warmed through. If you’re in a hurry, the microwave works in a pinch (about 30 seconds to 1 minute), but the oven or toaster oven really brings them back to life!
FAQs
Can I make Deep Dish Pizza Cupcakes ahead of time for a party?
Absolutely! You can assemble everything up to a few hours in advance, cover the muffin tin with plastic wrap, and keep it in the fridge. Just pop them in the oven when you’re ready to bake, and serve ‘em up hot and fresh.
Are there any gluten-free options for the crust?
Yes, you can easily swap in your favorite store-bought or homemade gluten-free pizza dough. Just follow the same steps, and watch baking times — gluten-free doughs can cook a little bit faster.
How do I keep the bottom of the crust from getting soggy?
Try not to overload the sauce, and make sure your oven is fully preheated before baking. A light layer of cheese under the sauce (the “cheese barrier” trick!) can also help keep the bottoms perfectly crisp.
Can I use other cheeses besides mozzarella?
Definitely! Feel free to experiment with blends like provolone, cheddar, or even a little smoked gouda for a unique twist. Mixing in your favorites will make your Deep Dish Pizza Cupcakes even more special.
What’s the best way to remove the cupcakes from the tin?
After letting them cool for a few minutes, simply run a thin knife or offset spatula around each cupcake to loosen any melty cheese and lift them out gently. Nonstick spray makes this step a breeze!
Final Thoughts
Deep Dish Pizza Cupcakes are pure fun — quick, customizable, and so satisfying in every cheesy bite. Grab your muffin tin, try different topping combos, and watch these mini pizzas disappear in minutes! I hope you’ll love them as much as I do and make them a star at your next gathering or family night.
Print
Deep Dish Pizza Cupcakes Recipe
- Total Time: 28 minutes
- Yield: 12 mini pizzas 1x
- Diet: Non-Vegetarian
Description
These Deep Dish Pizza Cupcakes are a fun twist on traditional pizza, baked in a muffin tin for individual servings that are perfect for parties or quick meals. With a golden crust, gooey cheese, and your favorite toppings, these mini pizzas are sure to be a hit!
Ingredients
Dough:
- 1 (13.8 oz) can refrigerated pizza dough
Toppings:
- 1/2 cup pizza sauce
- 1 cup shredded mozzarella cheese
- 1/4 cup grated Parmesan cheese
- 1/2 cup mini pepperoni slices or chopped pepperoni
- 1/4 teaspoon Italian seasoning
- nonstick cooking spray
- optional toppings: chopped bell peppers, mushrooms, or olives
Instructions
- Preheat the Oven: Preheat the oven to 375°F and lightly grease a 12-cup muffin tin with nonstick spray.
- Prepare Dough: Unroll the pizza dough and cut into 12 equal squares. Press each square into the muffin cups, ensuring the dough comes up the sides.
- Add Sauce and Cheese: Add about 2 teaspoons of pizza sauce to each cup. Sprinkle with mozzarella cheese and desired toppings.
- Top and Bake: Top with Parmesan cheese and Italian seasoning. Bake for 15–18 minutes until golden and bubbly.
- Cool and Serve: Let cool for 5 minutes before removing from the muffin tin. Serve warm.
Notes
- These are perfect for parties or lunchboxes.
- Swap pepperoni for cooked sausage or keep them vegetarian with your favorite veggies.
- Prep Time: 10 minutes
- Cook Time: 18 minutes
- Category: Appetizer
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 pizza cupcake
- Calories: 160
- Sugar: 2g
- Sodium: 390mg
- Fat: 7g
- Saturated Fat: 3g
- Unsaturated Fat: 3g
- Trans Fat: 0g
- Carbohydrates: 17g
- Fiber: 1g
- Protein: 7g
- Cholesterol: 15mg